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Pull requests: scverse/scanpy

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Pull requests list

feat: update and speedup harmony
#4232 opened Jul 22, 2026 by Intron7 Member Loading… 1.13.0
1
fix: numba jit issue
#4231 opened Jul 21, 2026 by Intron7 Member Loading… 1.12.3
1
1
Update template to v0.8.0
#4221 opened Jul 17, 2026 by scverse-bot Loading…
1
feat: pp.scale allow selecting correction
#4220 opened Jul 16, 2026 by AxelMcKenna Contributor Loading…
2 of 3 tasks
2
feat: add min_cells parameter to dotplot
#4218 opened Jul 15, 2026 by AlsoTheZv3n Loading…
1
ci: pre-commit autoupdate
#4209 opened Jul 13, 2026 by pre-commit-ci Bot Loading…
1
fix: guard bw conversion in pl.spatial against missing image
#4207 opened Jul 12, 2026 by steps-re Loading…
4 tasks done
3
feat: add Array API support via array-api-compat
#4179 opened Jun 25, 2026 by amalia-k510 Contributor • Draft
13
feat: add networkit flavor for parallel Leiden clustering
#4170 opened Jun 22, 2026 by amalia-k510 Contributor • Draft
16
feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization
#4160 opened Jun 14, 2026 by rwbaber Contributor Loading…
1 of 3 tasks
24
ci: bump codecov/codecov-action from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#4146 opened Jun 8, 2026 by dependabot Bot Loading…
1
fix(experimental.pp.hvg): scope per-batch clip threshold in pearson_residuals HVG Area – Preprocessing 🧼
#4138 opened May 23, 2026 by Arshammik Loading… 1.12.3
4
fix: anchor sc.pl.scatter colorbar to user-supplied ax
#4137 opened May 21, 2026 by gkneighb Loading… 1.12.3
1
3
feat: allow precomputed connectivities in neighbors
#4133 opened May 19, 2026 by ehsanestaji • Draft
2 of 3 tasks
1.12.3
1
3
fix: consistent modularity by using Weighted_Adjacency directly
#4113 opened May 8, 2026 by flying-sheep Member • Draft
2 of 3 tasks
2.0.0
1
4
add backends
#4108 opened May 7, 2026 by Intron7 Member • Draft
1
Optimize sparse matrix aggregation and conversion handling
#4073 opened Apr 17, 2026 by mumichae Contributor Loading…
3 tasks done
1
4
feat: add layer argument to 10x read functions
#4072 opened Apr 17, 2026 by flying-sheep Member • Draft
1 of 3 tasks
1
1
perf: parallel downsample
#4004 opened Mar 18, 2026 by flying-sheep Member • Draft
11
fix: reorder pts/pts_rest to match significance ranking in rank_genes_groups
#3997 opened Mar 10, 2026 by LiudengZhang Contributor Loading…
3 tasks done
1
5
fix: regress_out for more threads than 64
#3954 opened Jan 26, 2026 by Intron7 Member Loading… 1.12.3
3
perf: try out new cliping numba kernel benchmark
#3952 opened Jan 23, 2026 by ilan-gold Contributor • Draft
3 tasks
1.13.0
3
docs: add inline example of pca_variance_ratio
#3950 opened Jan 22, 2026 by marvinbuff Loading… 1.12.3
1
Remove "n_genes_by_{expr_type}" typo from variable-level qc metrics docs
#3916 opened Dec 15, 2025 by patcon Loading…
2
chore(deps): bump actions/upload-artifact from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3913 opened Dec 15, 2025 by dependabot Bot Loading…
2
ProTip! Updated in the last three days: updated:>2026-07-21.